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Zebrafish UCL

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  • ZebrafishBrain
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Tranverse section of a zebrafish eye at 3dpf

Tranverse section of a zebrafish eye at 3dpf

Zebrafish brain segmented

Zebrafish brain segmented

by Tom Hawkins & Kate Turner

Forebrain (purple), mid-brain (blue) and hindbrain (green).

Blood cover

Blood cover

by Gaia Gestri

Transverse section of a wild-type eye at 3dpf

Transverse section of a wild-type eye at 3dpf

Sarcomere

Sarcomere

by Tom Hawkins

Sloth mutant and wildtype embryos arranged so to resemble a muscle sarcomere

Brn3a:GFP at 48hpf

Brn3a:GFP at 48hpf

by Kate Turner

Lateral view of a Brn3a:GFP embryo labelled wth anti-GFP and anti-tubulin antibodies. This transgenic line labels the sensory neuromasts, retina , optic tectum and the habenula. 

2dpf-TOPdGFP

2dpf-TOPdGFP

by Mate Varga

Optic chiasm

Optic chiasm

by Kate Turner

Ventral view of a Brn3a:GFP embryo labelled wth anti-GFP and anti-tubulin antibodies. This transgenic line labels the sensory neuromasts, the habenula, retina and optic nerves decussating at the optic chiasm on their way to the optic tectum.  

Calretinin dorsal view

Calretinin dorsal view

by Kate Turner

Calretinin positive nuclei (green) and their processes in the olfactory bulbs, epithalamus, optic tectum and cerebellum. Dorsal 3dpf embryo.

 

5HT

5HT

by Kate Turner

Ventral view of a 4dpf larvae labelled with anti-5HT antibody to label serotinergic neurons in the preoptic, posterior tuberculum, hypothalamus and raphe.

Calretinin neurons in the pretectum and optic tectum

Calretinin neurons in the pretectum and optic tectum

by Kate Turner

Calretinin positive nuclei and their processes in the optic tectum and optic nerve (green). Frontal view of 3dpf dissected embryo.

 

Tg(Dlx4/6:GFP)

Tg(Dlx4/6:GFP)

by Kate Turner

GFP expressed in many dopaminergic and GABAergic cells within the brain, shown here in the optic tectum, cerebellum, epithalamus and telencephalon of Tg(Dlx4/6:GFP) embryo. Dorsal view, 3dpf.

 

Foxd3:GFP

Foxd3:GFP

by Kate Turner

Pineal organ and the pineal processes that form the dorso-ventral diencephalic tract (green) descending ventrally in 60hpf Tg(FoxD3:GFP) embryo.

 

tela

tela

by Kate Turner

Enhancer-trap transgenic expressing GFP in the tela choroidia, pineal organ and olfactory bulbs. Dorsal view, 60 hpf.

Axons and neuropil

Axons and neuropil

by Jay Patel

Dorsal view of a 4dpf larva labelled with anti-tubulin(green) and anti-SV2(red) antibodies.

Habenula in Brn3a:GFP

Habenula in Brn3a:GFP

by Kate Turner

Dorsal view of a 4dpf Tg(Brn3a:GFP)embryo.

Brn3a optic tract

Brn3a optic tract

by Kate Turner

Lateral view of a 4dpf Tg(Brn3a:GFP) embryo.

Neurons in the hindbrain

Neurons in the hindbrain

by Dave Lyons

Olfactory glomeruli in a Tg(DLx4/6:GFP) embryo

Olfactory glomeruli in a Tg(DLx4/6:GFP) embryo

by Monica Folgueira

ET11

ET11

by Kate Turner

Dorsal view of a 4dpf Tg(ET11:GFP) embryo.

Kate Turner

The DDC

The DDC

by Kate Turner

3D rendering of a 4dpf Tg(ET16:GFP) embryo.

Tg(vmat2:GFP)

Tg(vmat2:GFP)

by Kate Turner

Ventral view of a 4dpf Tg(vmat2:GFP) embryo. This enhancer-trap transgenic labels a subset of neurons in the olfactory bulbs and telencephalon, hypothalamus and posterior tuberculum and the raphe. 

Tg(ET16:GFP) expresssion in the habenulae.

Tg(ET16:GFP) expresssion in the habenulae.

by Isaac Bianco

The left habenula of a Tg(ET16:GFP) embryo.

The left habenula of a Tg(ET16:GFP) embryo.

by Kate Turner

Ventral view of a 4dpf Tg(ET16:GFP) embryo.

Ventral view of a 4dpf Tg(ET16:GFP) embryo.

by Kate Turner

This transgenic shows habenula terminals spiralling in the IPN.

Focal electroporation of an habenular neuron.

Focal electroporation of an habenular neuron.

by Isaac Bianco

HuC:GFP in the retina

HuC:GFP in the retina

by Florencia Cavodeassi

Section through an eye of a 3 days old embryo immunostained to highlight a subset of neurons in the retina (green, Tg{HuC:GFP}) and their axonal projections (red, Zn5).

Coronal section through the head of a 2.5 days old embryo

Coronal section through the head of a 2.5 days old embryo

by Florencia Cavodeassi

Coronal section through the head of a 2.5 days old embryo at the level of the eyes, stained with toloudine blue to reveal the highly organised architecture of the differentiating retina

 

Dorsal view of the anterior neural plate

Dorsal view of the anterior neural plate

by Florencia Cavodeassi

Dorsal view of the anterior neural plate, immunostained to reveal the eye field, the primordium of the eyes (red, Tg{rx3:GFP}) and the distribution of filamentus actin (green, phalloidin).

 

Frontal view of the anterior neural plate at the onset of evagination

Frontal view of the anterior neural plate at the onset of evagination

by Florencia Cavodeassi

Frontal view of the anterior neural plate at the onset of evagination of the optic vesicles (red, Tg{rx3:GFP}; green, F-actin).

Innervation of the Interpeduncular nucleus.

Innervation of the Interpeduncular nucleus.

by Isaac Bianco

JP2 SV2_tub_web3.jpg
KC3-2-3som_composite.jpg
KC4 RGCs_withath5gfp.jpg
Sunrise in the eye: zebrafish retina

Sunrise in the eye: zebrafish retina

By Kara Cerveny

This photomicrograph shows the retina from the eye of a three-day-old zebrafish (Danio rerio).

The retina is viewed here from the front, as if the viewer is looking directly into the eye of the fish. This image is of the whole eye, created by reflecting half the image to represent the naturally occurring symmetry. It was created using a double in situ hybridisation - a staining technique that identifies spatial expression of gene products. Using this technique, different structures can be identified by staining for genes known to be found in specific tissues. 

Retinal stem cells start to differentiate to become functional retinal neurons that are responsible for sending visual signals to the brain. Undifferentiated stem cells are shown in red, whereas the cells that have started to differentiate are shown in purple and are located at the periphery of the retina. The central yellow region is the lens.
 

GFP-expressing cranial motor neurons

GFP-expressing cranial motor neurons

by Kate Turner

Beautiful eye

Beautiful eye

by Kate Turner

Tg(tbr:GFP)

Tg(tbr:GFP)

by Kate Turner

Lateral view of a Tg(tbr:GFP) and tubulin. GFP labelling cells in the telencephalon, midbrain and hindbrain, tubulin (red) labelling the axonal tracts in the brain.

Zebrafish

Zebrafish

by Lukas Roth

Zebrafish BW

Zebrafish BW

by Lukas Roth

Adult zebrafish eye

Adult zebrafish eye

by Lukas Roth

diI and diO labelled retinal projections in a wingnut mutant

diI and diO labelled retinal projections in a wingnut mutant

by Lukas Roth

Dorsal views of diI and diO labelled retinal projections in a wingnut mutant

 

the pineal organ and left-sided parapineal nucleus in a fish embryo

the pineal organ and left-sided parapineal nucleus in a fish embryo

by Miguel Concha

Dorsal view of the pineal organ and left-sided parapineal nucleus in a fish embryo1

 

The pineal organ labelled in red and the left-sided parapineal nucleus in green

The pineal organ labelled in red and the left-sided parapineal nucleus in green

by Miguel Concha

The pineal organ labelled in red and the left-sided parapineal nucleus in green 2

The pineal organ labelled in red and the left-sided parapineal nucleus in green 2

by Miguel Concha

Pineal and parapineal

Pineal and parapineal

by Miguel Concha

The larger pineal organ in green (centre) with the left sided smaller parapineal nucleus. The bilateral asymetric (larger in the left) habenulae.

 

Floating head GFP in the epithalamus

Floating head GFP in the epithalamus

by Miguel Concha

Dorsal view of an early zebrafish embryo

Dorsal view of an early zebrafish embryo

By Monica Folgueira

Confocal micrograph of a transgenic zebrafish embryo at 24 hours post-fertilization, showing expression of the fusion protein PARD3_GFP. This means that whenever the pard3 gene is expressed green fluorescent protein (GFP) will be produced, allowing the researcher to visualise the location of this gene in development. 

In this image the embryo is viewed from the back (dorsally) sitting on top of a big yolk sac that provides nutrients for its development. GFP expression is seen in the surface of the neuroepithelium and thus highlights the ventricle of the brain, as well as in epithelial cells of the skin recovering the yolk.

Reticulospinal neuron

Reticulospinal neuron

By Monica Folgueira

Confocal micrograph of a transverse section of the brain of a zebrafish embryo, at the level of the hindbrain. The brain section was stained using an antibody that marks a calcium binding protein (calretinin). The image shows a big reticulospinal neuron and its processes, surrounded by other smaller neurons. Reticulospinal neurons are specific neurons found in the brains of fish that are thought to be involved in coordinating swimming.

Tg(1.4dlx5a-6a:GFP) embryo stained against GFP and acetylated tubulin

Tg(1.4dlx5a-6a:GFP) embryo stained against GFP and acetylated tubulin

by Monica Folgueira

Tg(1.4dlx5a-6a:GFP) embryo stained against GFP, SV2 and acetylated tubulin

Tg(1.4dlx5a-6a:GFP) embryo stained against GFP, SV2 and acetylated tubulin

by Monica Folgueira

GFP labelling areas of the forebrain and midbrain of a young zebrafish embryo

GFP labelling areas of the forebrain and midbrain of a young zebrafish embryo

by Marina Mione

Dorsal view of a young zebrafish embryo; GFP labels cells in the forebrain and midbrain of the embryo

Dorsal view of a young zebrafish embryo; GFP labels cells in the forebrain and midbrain of the embryo

by Marina Mione

Transverse sections of zebrafish heads frontal view (blue) (cover)

Transverse sections of zebrafish heads frontal view (blue) (cover)

by Masaya Take-Uchi

Transverse sections of zebrafish heads frontal view (orange) (cover)

Transverse sections of zebrafish heads frontal view (orange) (cover)

by Masaya Take-Uchi

A few weird looking fish from an old print

A few weird looking fish from an old print

by Anon

Pineal and parapineal in Tg(flh:GFP) embryo.

Pineal and parapineal in Tg(flh:GFP) embryo.

by Jenny Regan

Zebrafish eye development

Zebrafish eye development

By Steve Wilson and Rachel MacDonald

This differential interference contrast image
shows a section through the eye of a three-day old
zebrafish embryo. At this stage of development,
the nerve cells in the retina have begun to
separate into different layers. The outer layer of
cells are stained black with a marker for
photoreceptor cells, the neurons that respond to
light. (credit: R. MacDonald & S. Wilson)

Zebrafish optic chiasm

Zebrafish optic chiasm

By Rachel MacDonald and Steve Wilson

Light microscope image of a WT(left) and mutant(right) two-day-old zebrafish embryo which has been stained to show
all of the nerve cell processes in the eyes and
brain. This embryo has a mutation in the Noi gene
causing many of the processes (axons) to get lost
as they cross the midline from the eye to their
target brain region.

 

Zebrafish eye development

Zebrafish eye development

By Rachel MacDonald and Steve Wilson

This differential interference contrast image
shows a section through the eye of a three-day old
zebrafish embryo. At this stage of development,
the nerve cells in the retina have begun to
separate into different layers. The outer layer of
cells are stained black with a marker for
photoreceptor cells, the neurons that respond to
light.

Green labelled axons projecting to the optic tectum

Green labelled axons projecting to the optic tectum

by Silvia Castro

Fungal fissure

Fungal fissure

by Gaia Gestri

Scanning electron micrograph of a 4dpf larvae

Scanning electron micrograph of a 4dpf larvae

by Leonardo Valdivia

Olfactory bulb(Tg(sox11a:GFP) and nerve(DiI)

Olfactory bulb(Tg(sox11a:GFP) and nerve(DiI)

by Kate Turner

Dorsal view of the forebrain of a zebrafish larva showing axons (blue) and neuropil (pink).

Dorsal view of the forebrain of a zebrafish larva showing axons (blue) and neuropil (pink).

by Jen Cook

Frontal view of the forebrain of a zebrafish larva showing axons (blue) and neuropil (pink).

Frontal view of the forebrain of a zebrafish larva showing axons (blue) and neuropil (pink).

by Jen Cook

Lateral view of the forebrain of a zebrafish larva showing axons (blue) and neuropil (pink).

Lateral view of the forebrain of a zebrafish larva showing axons (blue) and neuropil (pink).

by Jen Cook

Pinhead Sculpture

Pinhead Sculpture

by Keith Wilson

Various commissure mutants

Various commissure mutants

by Steve Wilson

Epiphysis

Epiphysis

By Steve Wilson

Lateral view of the head region in a zebrafish
embryo which shows neuronal structure in the
epiphysial region of the diencephalon, part of
the developing forebrain. This is the region where
where neurons first develop in the forebrain.
Here, axons labelled with diI can be seen
extending from epiphysial projection neurons.

Zebrafish growth cone

Zebrafish growth cone

By Steve Wilson

This zebrafish embryo neuron is extending a long
process or axon through the brain, whose leading
edge is called the growth cone. The growth cone
explores the environment in order to navigate
towards the correct target nerve cells where it
will eventually form a synapse, a connection
through which nerve impulses pass from one neuron
to the next.

Axon extension

Axon extension

By Steve Wilson

Neurons extending numerous axons in the developing
forebrain of a zebrafish embryo.

Commissural axons and dividing cells

Commissural axons and dividing cells

by Zsolt Lele

Galanin mRNA

Galanin mRNA

by Aisling O'Sullivan & Marcus Ghosh

The expression pattern of Galanin mRNA (by fluorescent in-situ hybridisation), at 6dpf, in 7 different WT fish. To make the samples comparable they have been registered using tERK.

Outer photoreceptor segments in an 8dpf zebrafish

Outer photoreceptor segments in an 8dpf zebrafish

by Gaia Gestri

Sagittal section across an 8 days post-fertilization zebrafish eye with the outer photoreceptor segments stained by anti-zpr1 (blue), UV cones expressing GFP (Tg(opn1sw1:GFP), magenta) and nuclei counterstained with DAPI (grey).

Outer photoreceptor segments in an 8dpf zebrafish

Outer photoreceptor segments in an 8dpf zebrafish

by Gaia Gestri

Sagittal section across an 8 days post-fertilization zebrafish eye with the outer photoreceptor segments stained by anti-zpr1 (blue), UV cones expressing GFP (Tg(opn1sw1:GFP), green) and nuclei counterstained with DAPI (magenta).

Pseudocoloured composite image of a zebrafish eye

Pseudocoloured composite image of a zebrafish eye

by Gaia Gestri

Pseudocoloured composite image of a zebrafish eye expressing the UV cones transgenic line Tg(opn1sw1:GFP) and counterstained with anti-zpr1 (outer photoreceptor segments) and DAPI (cell nuclei).

Zebrafish eye

Zebrafish eye

by Gaia Gestri

Sagittal section across a zebrafish eye with the outer photoreceptor segments stained by anti-zpr1 (magenta), amacrine and retinal ganglion cells expressing GFP (Tg(islt1:GFP)), and counterstained with DAPI (blue).

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Tranverse section of a zebrafish eye at 3dpf
Zebrafish brain segmented
Blood cover
Transverse section of a wild-type eye at 3dpf
Sarcomere
Brn3a:GFP at 48hpf
2dpf-TOPdGFP
Optic chiasm
Calretinin dorsal view
5HT
Calretinin neurons in the pretectum and optic tectum
Tg(Dlx4/6:GFP)
Foxd3:GFP
tela
Axons and neuropil
Habenula in Brn3a:GFP
Brn3a optic tract
Neurons in the hindbrain
Olfactory glomeruli in a Tg(DLx4/6:GFP) embryo
ET11
The DDC
Tg(vmat2:GFP)
Tg(ET16:GFP) expresssion in the habenulae.
The left habenula of a Tg(ET16:GFP) embryo.
Ventral view of a 4dpf Tg(ET16:GFP) embryo.
Focal electroporation of an habenular neuron.
HuC:GFP in the retina
Coronal section through the head of a 2.5 days old embryo
Dorsal view of the anterior neural plate
Frontal view of the anterior neural plate at the onset of evagination
Innervation of the Interpeduncular nucleus.
JP2 SV2_tub_web3.jpg
KC3-2-3som_composite.jpg
KC4 RGCs_withath5gfp.jpg
Sunrise in the eye: zebrafish retina
GFP-expressing cranial motor neurons
Beautiful eye
Tg(tbr:GFP)
Zebrafish
Zebrafish BW
Adult zebrafish eye
diI and diO labelled retinal projections in a wingnut mutant
the pineal organ and left-sided parapineal nucleus in a fish embryo
The pineal organ labelled in red and the left-sided parapineal nucleus in green
The pineal organ labelled in red and the left-sided parapineal nucleus in green 2
Pineal and parapineal
Floating head GFP in the epithalamus
Dorsal view of an early zebrafish embryo
Reticulospinal neuron
Tg(1.4dlx5a-6a:GFP) embryo stained against GFP and acetylated tubulin
Tg(1.4dlx5a-6a:GFP) embryo stained against GFP, SV2 and acetylated tubulin
GFP labelling areas of the forebrain and midbrain of a young zebrafish embryo
Dorsal view of a young zebrafish embryo; GFP labels cells in the forebrain and midbrain of the embryo
Transverse sections of zebrafish heads frontal view (blue) (cover)
Transverse sections of zebrafish heads frontal view (orange) (cover)
A few weird looking fish from an old print
Pineal and parapineal in Tg(flh:GFP) embryo.
Zebrafish eye development
Zebrafish optic chiasm
Zebrafish eye development
Green labelled axons projecting to the optic tectum
Fungal fissure
Scanning electron micrograph of a 4dpf larvae
Olfactory bulb(Tg(sox11a:GFP) and nerve(DiI)
Dorsal view of the forebrain of a zebrafish larva showing axons (blue) and neuropil (pink).
Frontal view of the forebrain of a zebrafish larva showing axons (blue) and neuropil (pink).
Lateral view of the forebrain of a zebrafish larva showing axons (blue) and neuropil (pink).
Pinhead Sculpture
Various commissure mutants
Epiphysis
Zebrafish growth cone
Axon extension
Commissural axons and dividing cells
Galanin mRNA
Outer photoreceptor segments in an 8dpf zebrafish
Outer photoreceptor segments in an 8dpf zebrafish
Pseudocoloured composite image of a zebrafish eye
Zebrafish eye
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