Cerebellum

Cerebellum

Schematic showing the different regions of the zebrafish cerebellum at 6dpf based on the 3D anatomical segmentation used by the  Zebrafish Brain Browser  by  Gupta et al., 2018

Schematic showing the different regions of the zebrafish cerebellum at 6dpf based on the 3D anatomical segmentation used by the Zebrafish Brain Browser by Gupta et al., 2018

Description


Ontology
 

is part of: hindbrain

has parts:


ZFIN

OLS Tree Diagram


Transgenic Lines that label this brain region


Antibodies that label this brain region

Key Publications

Dohaku, R., Yamaguchi, M., Yamamoto, N., Shimizu, T., Osakada, F., Hibi, M. (2019)
Tracing of Afferent Connections in the Zebrafish Cerebellum Using Recombinant Rabies Virus.
Frontiers in neural circuits. 13:30.

Takeuchi, M., Matsuda, K., Yamaguchi, S., Asakawa, K., Miyasaka, N., Lal, P., Yoshihara, Y., Koga, A., Kawakami, K., Shimizu, T., Hibi, M. (2015)
Establishment of Gal4 transgenic zebrafish lines for analysis of development of cerebellar neural circuitry. Developmental Biology. 397(1):1-17.

corpus cerebelli

corpus cerebelli

Schematic showing the position of the corpus cerebelli in sagittal, horizontal and coronal sections through the zebrafish brain.  Based on the anatomical segmentation of 3 day old zebrafish larval brain by Thomas Müller, Olaf Ronneberger, Wolfgang Driever and colleagues. For details see Ronneberger et al., Nat. Meth. 2012 and  http://vibez.informatik.uni-freiburg.de   Abbreviations: Ce, cerebellar plate; D, dorsal telencephalon/pallium; E, epiphysis; EmT, eminentia thalami; Hb, habenula; Hyp, hypothalamus; MO, medulla oblongata; OB, olfactory bulb; OT, optic tectum; PG, preglomerular complex; PO, preoptic area;PrT, pretectum; PTd, posterior tuberculum dorsal part; PTh, prethalamus; PTv posterior tuberculum ventral part; Teg, tegmentum; Th, thalamus; TS, torus semicircularis; V, ventral telencephalon/subpallium; Va, valvula cerebelli.

Schematic showing the position of the corpus cerebelli in sagittal, horizontal and coronal sections through the zebrafish brain.
Based on the anatomical segmentation of 3 day old zebrafish larval brain by Thomas Müller, Olaf Ronneberger, Wolfgang Driever and colleagues. For details see Ronneberger et al., Nat. Meth. 2012 and http://vibez.informatik.uni-freiburg.de

Abbreviations: Ce, cerebellar plate; D, dorsal telencephalon/pallium; E, epiphysis; EmT, eminentia thalami; Hb, habenula; Hyp, hypothalamus; MO, medulla oblongata; OB, olfactory bulb; OT, optic tectum; PG, preglomerular complex; PO, preoptic area;PrT, pretectum; PTd, posterior tuberculum dorsal part; PTh, prethalamus; PTv posterior tuberculum ventral part; Teg, tegmentum; Th, thalamus; TS, torus semicircularis; V, ventral telencephalon/subpallium; Va, valvula cerebelli.

Description


Ontology
 

is part of:

has parts:


ZFIN

OLS Tree Diagram


Asset 9-100.jpg

Transgenic Lines/Antibodies that label this brain region


Key Publications

Dohaku, R., Yamaguchi, M., Yamamoto, N., Shimizu, T., Osakada, F., Hibi, M. (2019)
Tracing of Afferent Connections in the Zebrafish Cerebellum Using Recombinant Rabies Virus.
Frontiers in neural circuits. 13:30.

medulla oblongata

medulla oblongata

Schematic showing the position of the medulla oblongata in sagittal, horizontal and coronal sections through the zebrafish brain.  Based on the anatomical segmentation of 3 day old zebrafish larval brain by Thomas Müller, Olaf Ronneberger, Wolfgang Driever and colleagues. For details see Ronneberger et al., Nat. Meth. 2012 and  http://vibez.informatik.uni-freiburg.de   Abbreviations: Ce, cerebellar plate; D, dorsal telencephalon/pallium; E, epiphysis; EmT, eminentia thalami; Hb, habenula; Hyp, hypothalamus; MO, medulla oblongata; OB, olfactory bulb; OT, optic tectum; PG, preglomerular complex; PO, preoptic area;PrT, pretectum; PTd, posterior tuberculum dorsal part; PTh, prethalamus; PTv posterior tuberculum ventral part; Teg, tegmentum; Th, thalamus; TS, torus semicircularis; V, ventral telencephalon/subpallium; Va, valvula cerebelli.

Schematic showing the position of the medulla oblongata in sagittal, horizontal and coronal sections through the zebrafish brain.
Based on the anatomical segmentation of 3 day old zebrafish larval brain by Thomas Müller, Olaf Ronneberger, Wolfgang Driever and colleagues. For details see Ronneberger et al., Nat. Meth. 2012 and http://vibez.informatik.uni-freiburg.de

Abbreviations: Ce, cerebellar plate; D, dorsal telencephalon/pallium; E, epiphysis; EmT, eminentia thalami; Hb, habenula; Hyp, hypothalamus; MO, medulla oblongata; OB, olfactory bulb; OT, optic tectum; PG, preglomerular complex; PO, preoptic area;PrT, pretectum; PTd, posterior tuberculum dorsal part; PTh, prethalamus; PTv posterior tuberculum ventral part; Teg, tegmentum; Th, thalamus; TS, torus semicircularis; V, ventral telencephalon/subpallium; Va, valvula cerebelli.

Description


Ontology
 

is part of:

has parts:


ZFIN

OLS Tree Diagram


Asset 9-100.jpg

Transgenic Lines/Antibodies that label this brain region


Key Publications

sensory trigeminal nucleus

sensory trigeminal nucleus

Description

“Trigeminal sensory neurons detect thermal and mechanical stimuli in the skin through their elaborately arborized peripheral axons. They send another process centrally to nnervate the hindbrain” (Sagasti et al., 2005)

“In the somatosensory system, chemical, mechanical and thermal stimuli to the head are sensed by different trigeminal sensory neuron subtypes that have varied morphologies and distinct axonal connections to second-order neurons “(Pan et al., 2012). The trigeminal sensory ganglion contains approximately 60 trigeminal sensory neurons. The trigeminal sensory ganglion is found just posterior to the eye, lateral to the anterior hindbrain.


Mosaic labelling with UAS:TdTomato of a single trigeminal sensory neuron whose elaborate peripheral axon extends over the surface of the head just under the skin.

Mosaic labelling with UAS:TdTomato of a single trigeminal sensory neuron whose elaborate peripheral axon extends over the surface of the head just under the skin.

In the spinal cord Rohon-Beard cells perform a similar sensory function until they are replaced by dorsal root ganglia later in development.

Rohon-Beard cell with soma in the spinal cord and peripheral axon covering the tip of the tail. Ths cell projects a central axon up the spinal cord to the hindbrain.

Rohon-Beard cell with soma in the spinal cord and peripheral axon covering the tip of the tail. Ths cell projects a central axon up the spinal cord to the hindbrain.

Ontology
 

is part of:

has parts:


ZFIN

OLS Tree Diagram


Asset 9-100.jpg

Transgenic Lines/Antibodies that label this brain region


Key Publications

Y. Albert Pan, Margaret Choy, David A. Prober, Alexander F. Schie
Robo2 determines subtype-specific axonal projections of trigeminal sensory neurons
Development 2012 139: 591-600; doi: 10.1242/dev.076588

Alvaro Sagasti,1, Matthew R. Guido, David W. Raible and Alexander F. Schier(2005)
Repulsive Interactions Shape the Morphologies and Functional Arrangement of Zebrafish Peripheral Sensory Arbors
Current Biology, Vol. 15, 804–814